|
-
Jun 27th, 2011, 04:13 PM
#1
Thread Starter
Hyperactive Member
[RESOLVED] Merge strings and remove overlap
Hi,
I have many strings in a two column text file. The first column is the start position, the second one is the string.
Ex:
Code:
41800403 ACTTACTTACCTACTTCCTTCCCCAAGCCCTTTTCCCCTGTTAAACCCCCCCTGCCACACTCCCAACCCCCATCCTTCCTTCAGGGGAGGCTGGCTGCATC
41800409 TTAGCTCCTTGCCCCCCCAAGGCCCTTTGCGCTGGTAACCTCTCCCTGCCACACTCCCAACCCCCATCCTTCCTTCAGGGGAGGCTGGCTGCATCCCCACT
41800426 CAAGGCCCTTTGCGCTGGTAAACTCTCCCTGCCACACTCCCAACCCCCATCCTTCCTTCAGGGGAGGCTGGCTGCATCCCCACTTCCTAGAGTACCTTCCA
41800448 CTCCCCCTGCCACACTCCCAACCCCCATCCTTCTTTCAGGGGAGGCTGGCTGCATCCCCACTTCCTGGAGTACCTTCCCAGATCTCCTGGGACAGGTCAAC
41800458 CACCCTCCCAACCCCCACCCGTCTTTCGGGGGAGGCTGGCTGCATCCCCCTTTCCTGGAGTACCTTCCCAGATCTCCTGGGACAGGTCAACAAACTTAGTC
41800458 CNCGCTCCCAGCCCCCATCCTTCTTTCAGGGGAGGCTGGCTGCATCCCCACTTCCTGGAGTACCTTCCCAGATCTCCTGGGACAGGTCAACAAACTTAGTC
41800459 CCCCGCCCACCCCCCCTCCTTCCGTCAGGGGAGGCTGGCTGCATCCCCACTTCCTGGAGTACCTTCCCAGATCTCCTGGGACAGGTCAACAAACTTAGTCT
41800460 CACCCCCAACCACCACCCGTCCTTCAGGGGAGGCTGGCTGCATCCCCACTTCCTGGAGTACCTTCCCAGATCTCCTGGGACAGGTCAACAAACTTAGTCTC
41800462 CTCCCAACCCCCATCCTTCCTTCAGGGGAGGCTGGCTGCATCCCCACTTCCCGGAGTACCTTCCCAGATCTCCTGGGACAGGTCAACACACTTAGACTCAC
41800464 CCCAACCCCCATCCTTCTTTCAGGGGAGGCTGGCTGCATCCCCACTTCCTGGAGTACCTTCCCAGATCTCCTGGGACAGGTCAACAAACTTAGTCTCACTT
41800464 CCCACCCCCCATCCTGCTTTCAGGGGAGGCTGGCTGCATCCCCACTTCCTGGAGTACCTTCCCAGATCTCCTGGGACAGGTCAACAAACTTAGTCTCACTT
41800467 CACCCCCATCCTTCTTTCAGGGGAGGCTGGCTGCATCCCCACTTCCTGGAGTACCTTCCCAGATCTCCTGGGACAGGTCAACAAACTTAGTCTCACTTTAG
41800476 CTGTCGTGCAGGGGAGGCTGGCTGCATCCCCACTTCCTGGAGTACCTTCCCAGATCTCCTGGGACAGGTCAACAAACTTAGTCTCACTTTAGGTTTTCCAA
41800478 TTCTTTCAGGGGAGGCTGGCTGCATCCCCACTTCCTGGAGTACCTTCCCAGATCTCCTGGGACAGGTCAACAAACTTAGTCTCACTTTAGGTTTTCCAAAT
41800478 TTCTTTCAGGGGAGGCTGGCTGCATCCCCACTTCCTGGAGTACCTTCCCAGATCTCCTGGGACAGGTCAACAAACTTAGTCTCACTTTAGGTTTTCCAAAT
The second column contains 100 chars.Obviously these strings have overlapped, if a start position is given and the string length is given.
How to merge them together?
Ex, I want start point is 38781735, end point is 38781900. The string length is 38781900-38781735+1
Thanks.
Posting Permissions
- You may not post new threads
- You may not post replies
- You may not post attachments
- You may not edit your posts
-
Forum Rules
|
Click Here to Expand Forum to Full Width
|