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For TextPad, there are over 30 top-level windows for this application...for scroll bar, combo boxes, buttons, etc. I can switch any of them that I like to the foreground but I really only want the one that would be maximized when the user clicks on the minimized application in the taskbar.
I have a baaaaaaaad feeling you have NO CLUE what a top level window is. Try looking at the taskbar. All the visible top-level windows, and only those windows, show up on the taskbar. (with a few exceptions). Scroll bars and combo boxes and buttons and other controls are NOT top-level windows, and I'd really like to know who told you they were, so I can kick his ass.